Murphy, T.M. and V. Cross. 2002. Should students get the instructor's lecture notes? Journal of Biological Education 36:72-75.

Yu, C.-W., T.M. Murphy, and C.-H Lin. 2003. Hydrogen peroxide-induced chilling tolerance in mung beans mediated through ABA-independent glutathione accumulation. Functional Plant Biology 30:955-963.

Murphy, T.M. 2003. Cell culture and secondary metabolites. In: Encyclopedia of Rose Science (A. Roberts, S. Gudin, T. Debener, eds.) Academic Press, London.

Berry, A.M., T.M. Murphy, P.A. Okubara, K.R. Jacobsen, S. Swensen and K. Pawlowski. 2004. Novel expression pattern of cytosolic glutamine synthetase in nitrogen-fixing root nodules of the actinorhizal host, Datisca glomerata. Plant Physiology 135:1849-1862.

Krasnow MN, Murphy TM 2004. Polyphenol glucosylating activity in cell suspensions of grape (Vitis vinifera) Journal of Agricultural And Food Chemistry 52:3467-3472.

Murphy, T.M. 2005. What's base excision repair good for?: Knockout mutants for FPG and OGG glycosylase genes in Arabidopsis. Physiologia Plantarum 123:227-232.

Murphy, T.M., George A. 2005. A comparison of two DNA base excision repair glycosylases from Arabidopsis thaliana. Biochemical and Biophysical Research Communications 329:869-872.

Rost, T.R., M.G. Barbour, C.R. Stocking and T.M. Murphy. 2006. Plant Biology, Second Edition. Thomson Brooks/Cole, Belmont, CA, 603 pp.

Shu J., Schellhorn, H.E., Murphy, T.M. 2006. Stationary phase-induction of G --> T mutations in Escherichia coli. Mutation Research 596:106-112.