Marker dataset


These text files in 'comma separated value' format hold all the information that can be browsed in the web site. These files can be opened with any text editor or spreadsheet software. The polymorphims featured in these files are only from the inter-specific analyses S. lycopesicum x S. pennellii (lxp) and S. lycopersicum x S. habrochaites (lxh). The dataset is divided in several files for convenience:

db_SNPs.csv - Inter-specific SNPs
db_Primers.csv - Primers designed for the inter-specific SNPs
db_CAPS.csv - Enzymes predicted to differentially digest these polymorphisms
db_Unigenes_info.csv - Unigene estimated allele sequences, intron positions and regions

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Tested markers


These text files in 'comma separated value' format hold a subset of markers from the above dataset that were tested by PCR amplification and digested with the corresponding restriction enzyme. These files can be opened with any text editor or spreadsheet software:

Tested_molecular_markers.csv - Tested Molecular Markers

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Polymorphism dataset


These text files in 'comma separated value' format hold all the polymorphisms obtained in this study. These are both S. lycopersicum (L) intra-specific polymorphisms and S. lycopesicum x S. pennellii (lxp) and S. lycopersicum x S. habrochaites (lxh) inter-specific polymorphisms. These files can be opened with any text editor or spreadsheet software. Due to the size of the files the SNPs are divided in several subsets:

SNP_list_Aa_change.csv - SNPs causing amino acid changes
SNP_list_Nonsense.csv - SNPs causing or disrupting stop codons
SNP_list_Silent.csv - SNPs causing silent mutations
SNP_list_UTR.csv - SNPs located in the predicted UTRs

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