• Chaudhuri B, Hormann F, Lalonde S, Brady SM, Orlando DA, Benfey PN, Frommer WB. (2008) Protonophore- and pH-insensitive glucose and sucrose accumulation detected by FRET nanosensors in Arabidopsis root tips. Plant Journal. Aug 12.
  • Long TA, Brady SM, Benfey PN. (2008) Systems Approaches to Identifying Gene Regulatory Networks in Plants. Annual Review of Cell and Developmental Biology. Jul 10. (co-first author)
  • Orlando DA, Brady SM, Koch J, Dinneny JR, Benfey PN. (2008) Manipulating Large Scale Gene Arabidopsis Expression Data: Identifying Dominant Expression Patterns and Biological Process Enrichment. Methods in Molecular Biology. In press.
  • Dinneny JR, Long TA, Wang JY, Mace D, Pointer S, Barran C, Brady SM, Schiefelbein JS, Benfey PN. (2008) Cell Identity Mediates the Response of Arabidopsis Roots to Salinity and Iron Stress. Science, 320:942-945.
  • Brady SM, Orlando DA, Lee JY, Wang, JY, Koch J, Dinneny JR, Mace D, Ohler U, Benfey PN. (2007) Dominant Root Expression Patterns Revealed in a High-Resolution Spatiotemporal Expression Map. Science. 318:801-806.
  • Brady SM, Benfey PN. (In press) Riding the Genomics Wave: Moving Towards a Systems Understanding of Root Development. Chapter in Plant Systems Biology (Blackwell Publishing).
  • Brady SM, Provart NJ. (2007) Extreme Breeding – Leveraging Genomics for Crop Improvement. Journal of the Science of Food and Agriculture. 97:925-929.
  • Brady SM, Song S, Dhugga K, Rafalski JA, Benfey PN. (2007) Combining Expression and Comparative Evolutionary Analysis: The COBRA Gene Family. Plant Physiology. 143:172-187.
  • Brady SM, Long, TA, Benfey PN. (2006) Unravelling the Dynamic Transcriptome. Plant Cell. 18:2101-2111.
  • Brady SM, Benfey PN. (2006). A systems approach to understanding root development. Canadian Journal of Botany. 84:1-7.
  • Toufighi K, Brady SM, Austin R, Ly E, Provart NJ. (2005) The Botany Array Resource: e-Northerns, Expression Angling and Promoter Analysis. Plant Journal. 43:153-163.
  • Brady SM, Sarkar SF, Bonetta D, McCourt P. (2003) The ABSCISIC ACID INSENSITIVE 3 (ABI3) gene is modulated by farnesylation and is involved in auxin signaling and lateral root development in Arabidopsis. Plant Journal. 34:67-75.
  • Brady SM, McCourt P. (2003) Hormone Cross-Talk in Seed Dormancy. Journal of Plant Growth Regulation. 22:25-31.