Recent Publications

 

Anne Britt

Deborah Cannington

Katie Dehesh

Tom Goliber

Andrew Groover

John Harada

Stacey Harmer

Bo Liu

 

William Lucas

Julin Maloof

Terence Murphy

Sharman O'Neill

Tom Rost

Neelima Sinha

Alan Stemler

Venkatesan Sundaresan

Steven Theg

 

Anne Britt:

  1. ATR and ATM play distinct roles in response to ionizing radiation, K. M. Culligan, C. E. Robertson, J. Foreman, P. Doerner, and A. B. Britt, Plant Journal, in press.

  2. Tissue-specific regulation of cell-cycle responses to DNA damage in Arabidopsis seedlings, E. Hefner, N. Huefner, and A. B. Britt, DNA Repair, 5 102-110 (2006).

  3. Maintenance of the plant genome under natural light. A. Britt and K. Culligan, in Cell Biology and Instrumentation: UV Radiation, Nitric Oxide and Cell Death in Plants” NATO Science Series, ISO Press, Amsterdam 2006.

  4. Ionizing radiation-dependent g-H2AX focus formation requires ATM and ATR. J. D. Friesner, B. Liu, K. M. Culligan, and A. B. Britt, Molecular Biology of the Cell, 16 2566-2576 (2005).

  5. ATR regulates a G2-phase cell cycle checkpoint in Arabidopsis thaliana. K. M. Culligan and A. B. Britt, Plant Cell, 16 1091-1104 (2004).

  6. Repair of DNA damage induced by solar UV. A. B. Britt, Photosynthesis Research, 81 105-1112 (2004).

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Deborah Cannington:

  1. Canington, Deborah K. and Thomas L. Rost.(2001) Vascular Tissues. In Richard Robinson, ed. Plant Sciences. The Macmillan Science Library, Macmillan Reference USA, New York.

  2. Rost, Thomas L. and Deborah K. (2001)Tissue Systems and Tissues. In Richard Robinson, ed. Plant Sciences. The Macmillan Science Library, Macmillan Reference USA, New York.

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Dr. Katayoon (Katie) Dehesh:

  1. Larson, T. R. Edgell, T., Byrne, J., Dehesh, K., and Graham I. A. (2002) Acyl CoA profiles of transgenic plants that accumulate medium chain fatty acids indicate inefficient triacylglycerol synthesis. The Plant Journal. 32: 519-527.

  2. Dehesh, K. (2001) How can we genetically engineer oilseed crops to produce high levels of medium-chain fatty acids? European Journal of Lipid Science and Technology. 103: 688-697.

  3. Dehesh, K., Tai, H., Edwards, P., Byrne, J and Jaworski, J. (2001) Overexpression of 3-ketoacyl-acyl carrier protein synthase IIIs (KASIII) in plants reduces the rate of lipid synthesis. Plant physiol. . 125: 1103-1114.

  4. Moche, M., Dehesh, K., Edwards, P, and Lindqvist (2001) The crystal structure of the Ã?-ketoacyl-acyl carrier protein synthase II from synechocystis Sp at 1.54 Ã? resolution and relationship to other condensing enzymes. Journal of Molecular Biology. 305: 491-503.

  5. Dehesh, K. (2000) Plant Lipid Biotechnology and GMOs . European Journal of Lipid Science and Technology. 102: 715-717.

  6. Basu, D., Dehesh, K., Schneider-Poetsch, H. J., Harrington, S. E., McCouch, S. R., and Quail, P. (2000) Rice PHYC gene: structure, expression, map position and evolution. Plant Mol. Biol. 44: 27-42.

  7. Wiberg,E., Edwards,P., Byrne, J. , Stymne, S., and Dehesh, K. (2000) The distribution of caprylate,caprate and laurate in lipids from developing and mature seeds of transgenic Brassica napus L. Planta. 212: 33-40.

  8. Froman, B., Edwards, P., Bursch, A., and Dehesh, K. (2000) ACX3; A novel medium-chain Acyl-CoA oxidase from Arabidopsis. Plant Physiol. 123: 733-741.

  9. Val, D., Lindquvist, L., Banu, B., Seshadri, K, and Dehesh, K. (2000) Re-engineering ketoacyl synthase specificity. Structure folding and design. 8: 565-566.

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Andrew Groover :

  1. A. Groover, J. Fontana, G. Dupper, C. Ma, R. Martienssen, S. Strauss, and R. Meilan (2004). Gene and enhancer trap tagging of vascular-expressed genes in poplar trees. Plant Physiol. In press.

  2. A. Groover and A. Jones (2003). IAA8 expression during vascular cell differentiation. Plant Mol. Biol. 51, 427-435.

  3. A. Groover, J. Fontana, J Arroyo, C. Yordan, W McCombie, and R. Martienssen (2003). Secretion trap tagging of secreted and membrane-spanning proteins using Arabidopsis gene traps. Plant Physiol. 132, 698-708.

  4. M. Byrne*, A. Groover*, F. Fontana, and R. Martienssen (2003). Phyllotactic pattern and stem cell fate are determined by the Arabidopsis Homeodomain protein BELLRINGER. Development in press (*shared first authorship)

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John Harada:

  1. Lee, H., Fischer, R.L., Goldberg, R.B., and Harada, J.J. (2003). Arabidopsis LEAFY COTYLEDON1 represents a functionally specialized subunit of the CCAAT binding transcription factor. Proc. Natl. Acad. Sci. USA 100: 2152ˆ2156

  2. Kwong, R.W., Bui, A.Q., Lee, H., Kwong, L.W., Fischer, R.L., Goldberg, R.B., and Harada, J.J. (2003). LEAFY COTYLEDON1-LIKE defines a class of regulators Essential for Embryo Development. Plant Cell 15: 5-18.

  3. Stone, S.L., Kwong, L.W., Matsudaira Yee, K., Pelletier, J., Lepiniec, L., Fischer, R.L., Goldberg, R.B., and Harada, John J. (2001).  LEAFY COTYLEDON2 encodes a B3 domain transcription factor that induces embryo development. Proc. Nat. Acad. Sci. USA, 98: 11806-11811.

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Stacey Harmer:

  1. Harmer, S. L. and Kay, S. A. (2005). Positive and negative factors confer phase-specific circadian regulation of transcription in Arabidopsis. Plant Cell/ 17/:1926-40.

  2. Harmer, S. L., Covington, M. F., Bläsing, O., and Stitt, M. (2005). Circadian regulation of global gene expression and metabolism. In: /Endogenous Plant Rhythms/, ed. Hall, A., and McWatters, H./, /Blackwell Publishing, pp.*133-165*.

  3. Farre, E. M., Harmer, S. L., Harmon, F. G., Yanovsky, M. J., and Kay, S. A. (2005). Overlapping and distinct roles of PRR7 and PRR9 in the Arabidopsis circadian clock. Current Biology /15/:47-54.

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Bo Liu:

  1. Pan, R., Y.R.J. Lee, and B. Liu. 2004. Localization of two homologous Arabidopsis kinesin-related proteins in the phragmoplast. Planta. 220:156-164.

  2. Preuss, M.L., D. Kovar, Y.R.J. Lee, C.J. Staiger, D.P. Delmer, and B. Liu. 2004. A plant-specific kinesin binds to actin microfilaments and is associated with cortical microtubules in cotton fibers. Plant Physiol. 136: 3945-3955.

  3. Lee, Y.R.J., and B. Liu. 2004. Cytoskeletal motors in Arabidopsis. Sixty-one kinesins and seventeen myosins. Plant Physiol. 136: 3877-3883.

  4. Lu, L., Y.R.J. Lee, R. Pan, J.N. Maloof, and B. Liu. 2005. An internal motor kinesin is associated with the Golgi apparatus and plays a role in trichome morphogenesis in Arabidopsis. Mol. Biol. Cell. 16:811-823.

  5. Friesner, J.D., B. Liu, K. Culligan, and A.B. Britt. 2005. Ionizing radiation-dependent g-H2AX focus formation requires Ataxia Telangiectasia mutated and Ataxia Telangiectasia mutated and Rad3-related. Mol. Biol. Cell. 16:2566-2576.

  6. Mao, T., L. Jin, H. Li, B. Liu, and M. Yuan. 2005. Two microtubule-associated proteins of the Arabidopsis MAP65 family function differently on microtubules. Plant Physiol. 138:654-662.

  7. Kim, J.-M., Lu, L., R. Shao, and B. Liu. 2006. Isolation of mutations that bypass the requirement of the septation initiation network for septum formation and conidiation in Aspergillus nidulans.  Genetics. 173:685-696.

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William J. Lucas:

  1. Yoo, B.-C., Kragler, F., Varkonyi-Gasic, E., Haywood, V., Archer-Evans, S., Lee, Y. M., Lough, T. J., and Lucas, W. J. 2004. A systemic small RNA signaling system in plants. Plant Cell 16:1979-2000.

  2. Lucas, W. J. and Lee, J.-Y. 2004. Plasmodesmata as a supracellular control network in plants. Nature Review Mol. Cell Biol.5:712-726

  3. Haywood, V., Yu, T.-S., Huang, N.-C. and Lucas, W. J. 2005. Phloem long-distance trafficking of GIBBERELLIC ACID INSENSITIVE  RNA regulates leaf development. Plant Journal 42:49-68.

  4. Rojas, M. R., Hagan, C., Lucas, W. J., and Gilberston, R. L. 2005. Exploiting chinks in the plant’s armor: Evolution and emergence of geminiviruses. Annu. Rev. Phytopathol. 43: 361-394.

  5.   Lee, J.-Y., Taoka, K., Yoo, B.-C., Ben-Nissan, G., Kim, D.-J. and Lucas, W. J. 2005. Plasmodesmal-associated proein kinase in tobacco and Arabidopsis recognizes a subset of non-cell-autonomous proteins. Plant Cell 17:2817-2831.

  6. Gilbertson, R. L., Rojas, M. R., and Lucas, W. J. 2005. Plasmodesmata and the phloem: conduits for local and long-distance signaling. Annual Plant Reviews 18:162-187.

  7.   Lucas, W. J. 2005. Plant viral movement proteins: Agents for cell-to-cell trafficking of viral genomes. Virology 344:169-184.

  8. Lough, T. J. and Lucas, W. J. 2006. Integrative plant biology: role of phloem long-distance macromolecular trafficking. Annu. Rev. Plant Biol. 57:203-232.

  9. Lough, T. J., Lee, R, H., Emerson, S. J.,  Forster, R. L. S. and Lucas, W. J. 2006. Functional analysis of the 5′ untranslated region of potexvirus RNA reveals a role in viral replication and cell-to-cell movement. Virology (In Press).

  10. Seo, Y.-S., Rojas, M. R., Lee, J.-Y., Jeon, J.-S., Ronald, P., Lucas, W. J., and Gilbertson, R. L. 2006. Identification and functional analysis of a common bean viral resistance gene that functions across plant families. Proc. Natl. Acad. Sci. USA (In Press).

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Julin Maloof:

  1. Balasubramanian S, Sureshkumar S, Agrawal M, Michael TP, Wessinger C, et al. (2006) The PHYTOCHROME C photoreceptor gene mediates natural variation in flowering and growth responses of Arabidopsis thaliana. Nat Genet 38: 711-5.

  2. Lu L, Lee YR, Pan R, Maloof JN, & Liu B (2005) An internal motor kinesin is associated with the Golgi apparatus and plays a role in trichome morphogenesis in Arabidopsis. Mol Biol Cell 16: 811-23.

  3. Maloof JN (2004) Plant development: slowing root growth naturally. Curr Biol 14: R395-6.

  4. Maloof JN (2005) Small but not forgotten. Heredity 96: 1-2.

  5. Wolyn DJ, Borevitz JO, Loudet O, Schwartz C, Maloof J, et al. (2004) Light-response quantitative trait loci identified with composite interval and eXtreme array mapping in Arabidopsis thaliana. Genetics 167: 907-17.

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Terence Murphy:

  1. Yu, C.-W., T.M. Murphy, and C.-H Lin. 2003. Hydrogen peroxide-induced chilling tolerance in mung beans mediated through ABA-independent glutathione accumulation. Functional Plant Biology 30:955-963.
    Murphy, T.M. (2003).

  2. Cell culture and secondary metabolites. In: Encyclopedia of Rose Science (A. Roberts, S. Gudin, T. Debener, eds.) Academic Press, London

  3. Murphy, T.M. . In vitro culture systems: their use for physiological and biochemical investigations and for production of secondary metabolites. In: Encyclopedia of Rose Science (A. Roberts, S. Gudin, T. Debener, eds.) Academic Press, London

  4. Yu, C.-W., T.M. Murphy, W.-W. Sung, and C.-H Lin. (2002) H2O2 treatment induces glutathione accumulation and chilling tolerance in mung bean. Functional Plant Biology 29:1-7.

  5. Murphy, T.M. and V. Cross. (2002) Should students get the instructor's lecture notes? Journal of Biological Education 36:72-75

  6. Murphy, T.M. and M.-J. Gao. (2001) Multiple forms of formamidopyrimidine-DNA glycosylase produced by alternative splicing in Arabidopsis thaliana. Journal of Photochemistry and Photobiology B. Biology 61:87-93.

  7. Gao, M.-J. and T.M. Murphy. (2001) Alternative forms of formamidopyrimidine-DNA glycosylase from Arabidopsis thaliana. Photochemistry and Photobiology 73:128-134.

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Sharman O'Neill:

  1. VanTassel, D.S., and O'Neill, S.D. (2001)Putative regulatory molecules in plants:evaluating melatonin. JPR 31:1-7

  2. Van Tassel, D.S., Roberts, N., Lewy, A., and O'Neill, S.D. (2001)Melatonin in plant organs. JPR 31:8-15

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Tom Rost:

  1. Dubrovsky, J.G. and T.L.Rost. 2003. Pericycle. In. Encyclopedia of Life Sciences.

  2. Chapman, K., E.P. Groot, S.A. Nichol and T.L. Rost. 2003. Primary root growth and the pattern of root apical meristem organization are coupled. Journal of Plant Growth Regulation 21: 287-295.

  3. Bloom, A.J., P.A. Meyerhoff, A.R. Taylor and T.L. Rost. (2003) Root development and absorption of ammonium and nitrate from the rhizosphere. Journal of Plant Growth Regulation 21: 416-431

  4. Groot,E.P., E.J. Sweeney and T.L. Rost. (2003) Development of the adhesive pad on climbing fir (Ficus pumila) stems from clusters of adventitious roots. Plant and Soil 248: 85-96.

  5. Baum, S.F., J.G. Dubrovsky and T.L. Rost. (2002) Apical organization and maturation events in Arabidopsis thaliana roots: Developmental changes over time. American Journal of Botany 89:908-920.

  6. Groot, E.P. and T.L. Rost. (2001) Patterns of apical organization in roots of flowering plants. Proceedings, The 6th ISRR Symposium. Roots: The Dynamic Interface Between Plants and the Earth. pp. 8-9

  7. Dubrovsky, J.G., T.L. Rost, A. Colón-Carmona, and P. Doerner. (2001) Early primordium morphogenesis during root initiation in Arabidopsis thaliana. Planta 214: 30-36.

  8. Dubrovsky, J.G. and T.L. Rost. (2001) Plant growth and development: Lateral root initiation. In. Encyclopedia of Applied Plant Sciences. (Eds.) B. Thomas, D. Murphy and B. Murray. Academic Press. London, UK. (In Press).

  9. Groot, E. and T.L. Rost. (2001) Cell division patterns and root apical organization. In. The Plant Cell Cycle and its Interfaces. (Ed.) D. Francis. Sheffield Academic Press Ltd., Sheffield, UK. Pp 137-158.

  10. Wenzel, C.L., Tong, K.L., and T.L. Rost. (2001) Modular construction of the epidermis and peripheral root cap in the Œopen‚ root apical meristem of Trifolium repens cv Ladino. Protoplasma 218: 214-224.

  11. Wenzel, C.L. and T. L. Rost. (2001) Cell division patterns in the root cap and epidermis of Arabidopsis thaliana roots. Protoplasma 218: 203-213.

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Neelima Sinha:

  1. Bharathan, G., Goliber, T., Moore, C., Kessler, S., Pham, T., Sinha, N. (2002) Homologies in leaf form inferred from KNOX1 gene expression during development. Science 296(5574):1858-1860

  2. Kessler, S. Seiki, S. Sinha, N. (2002) Xcl1 causes delayed oblique periclinal cell divisions in developing maize leaves, leading to cellular differentiation by lineage instead of position. Development 129:1859-1869

  3. Bharathan, G., Sinha, N. (2001) The regulation of compound leaf development. Plant Physiology 127:1533-1538

  4. Kessler, S., Kim, M., Pham, T., Weber, N., and Sinha, N. (2001) Mutations Altering Leaf Morphology In Tomato. Int. J. Plant Sci. 162(3):475-492.

  5. Kim, M., Canio, W., Kessler, S., Sinha, N. (2001) Developmental Changes Due to Long-Distance Movement of a Homeobox Fusion Transcript in Tomato. Science 293:287-289.

  6. Provencher L.M., Miao, L., Sinha, N. Lucas, W.J. (2001) Sucrose Export Defective 1 encodes a novel protien implicated in chloroplast-to-nucleus signaling. Plant Cell, Volume 13, Issue 5, 2001, Pages 1127-1141

  7. Running, M., Scanlon, M., Sinha, N. (2000) Maize Genetics 2000 - And Beyond. Plant Cell, Volume 12, Issue 6: 829-835.

  8. Sinha, N. (2000) The Response of Epidermal Cells to Contact. Trends in Plant Science, Volume 5, Issue 6: 233-234.

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Alan Stemler:

  1. Yih-Kuang Lu, Steven M Theg and Alan J Stemler (2005) Carbonic Anhydrase Activity of the Photosystem II OEC33 Protein from Pea. Plant Cell Physiology 46: 1944-1953.

  2. Lu, Y-K. and Stemler, AJ (2002) Extrinsic photosystem II carbonic anhydrase in maize mesophyll chloroplasts. Plant Physiology 128:643-649

  3. Stemler A.J. (2002) The bicarbonate effect, oxygen evolution, and the shadow of Otto Warburg. Photosynthesis Research

  4. Stemler, A.J., and Lu, Y.-K. (2001) PSII carbonic anhydrase activity and the bicarbonate effect. Proceedings of the XIIth International Congress on Photosynthesis

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Venkatesan Sundaresan:

  1. Jiang, L.X., Yang, S.L, Xie, L.F., Puah, C.S., Zhang. X., Yang, W.C., Sundaresan, V., Ye, D., 2005.  VANGUARD1 encodes a pectin methylesterase that enhances pollen tube growth in the Arabidopsis style and transmitting tract. The Plant Cell (online January 19, 2005).

  2. Pagnussat, G., Yu, H.-J., Ngo, Q., Rajani, S., Mayalagu, S., Johnson, C., Capron, A., Xie, L.-F., Ye, D.,  Sundaresan, V., 2005.  Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis.Development132:603-614

  3. Nishal, B., Tantikanjana, T., Sundaresan, V., 2005.  An Inducible Targeted Tagging System for Localized Saturation Mutagenesis in Arabidopsis. Plant Physiology  137:3-12.

  4. Adai A., Johnson, C., Mlotshwa, S., Archer-Evans, S., Manocha, V., Vance, V., Sundaresan, V., 2005 Computational prediction of miRNAs in Arabidopsis thaliana. Genome Research15:78-91.

  5. Tantikanjana T, Mikkelsen MD, Hussain M, Halkier BA, Sundaresan V, 2004. Functional analysis of the tandem-duplicated P450 genes SPS/BUS/CYP79F1 and CYP79F2 in glucosinolate biosynthesis and plant development by Ds transposition-generated double mutants. Plant Physiol.135:840-848.

  6. Hirochika H, Guiderdoni E, An G, Hsing YI, Eun MY, Han CD, Upadhyaya N, Ramachandran S, Zhang Q, Pereira A, Sundaresan V, Leung H, 2004.  Rice mutant resources for gene discovery. Plant Mol Biol.54:325-334.

  7. Kolesnik, T.,   Szeverenyi, I., Bachmann , D., Chellian, S.K., Jiang, S., Rengasamy, R., Cai, M., Ma, Z.,   Sundaresan, V., Ramachandran,   S. , 2004. Establishing an Efficient Ac/Ds Tagging System in Rice: Large-Scale Analysis of Ds Flanking Sequences. The Plant Journal   37 :301-314.

  8. Kwee, H.S., and Sundaresan, V. , 2003. The NOMEGA gene required for female gametophyte development encodes the putative APC6/CDC16 component of the Anaphase Promoting Complex in Arabidopsis.   The Plant Journal   36 :853-866.

  9. Yang, S.L.,   Xie, L.F.,   Mao,H.-Z., Puah, C.S., Yang, W.C., Jiang, L., Sundaresan,V., and Ye,D., 2003. The TAPETUM DETERMINANT 1 Gene Is Required for Cell Specialization in The Arabidopsis   Anther.   The Plant Cell   15 :2792-804 .

  10. Buell, C.R., and Sundaresan, V.,   2003. A workshop on establishing a rice resource center in the United States. Plant Physiology   132 :1137.

  11. Reddy, T.V., Agashe, B., Kaur, J., Sundaresan , V. and Siddiqi, I., 2003. The DUET Gene is Necessary for Chromosome Organization and Progression During Male Meiosis in Arabidopsis and Encodes a PHD Finger Protein. Development   130 :5975-87.

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Steven Theg:

  1. Page M.L., Hamel P..P, Gabilly S.T., Zegzouti H., Perea J.V., Alonso J.M., Ecker J.R., Theg S.M., Christensen S.K. and Merchant S. (2004) A homolog of prokaryotic thiol disulfide transporter CcdA is required for the assembly of the cytochrome b6f complex in Arabidopsis chloroplasts.  J. Biol. Chem 279: 32474-32482.

  2. Theg, S.M., Cline, K., Finazzi, G. and Wollman, F.-A. (2005) The energetics of the chloroplast Tat protein transport pathway revisited –­ CORRESPONDENCE.  Trends in Plant Science 10: 153-154.

  3. Hofmann, N. R. and Theg, S.M. (2005) Toc64 is not required for protein import into chloroplasts.  The Plant Journal 43: 675-87.

  4. Hofmann, N.R. and Theg, S.M. Theg (2005) Integration of proteins into the chloroplast outer envelope membrane.  Trends in Plant Science 10: 450-457.

  5. Inoue, K., Potter, D., Shipman, R.L., Perea, J.V. and Theg. S.M.  (2005)  Involvement of a type I signal peptidase in biogenesis of chloroplasts – Towards identification of the enzyme for maturation of the chloroplast protein translocation channel. In Photosynthesis: Fundamental Aspects to Global Perspectives, eds. van der Est A and Bruce D. (Allen Press, Lawrence), pp. 933-935.

  6. Inoue K, Baldwin AJ, Shipman RL, Matsui K, Theg SM and Ohme-Takagi M. (2005) Complete maturation of the plastid protein translocation channel requires a type I signal peptidase.  J Cell Biol. 2005 Nov 7;171(3):425-30.

  7. Theg, S.M. and Shi, L.-X.  (2005)  Protein transport and post-translational processing in Photosystem II biosynthesis and homeostasis.  In Photosystem II:  The Light-Driven Water:Plastoquinone Oxidoreductase, eds. Wydrzynski, T.J. and Satoh, K. (Springer, Berlin), pp. 669-682.

  8. Hofmann, N.R. and Theg. S.M. (2005) Protein- and energy-mediated targeting of proteins to the chloroplast outer envelope membrane.  The Plant Journal 44:917-927.

  9. Lu, Y-K., Theg, S.M. and Stemler, A.J. (2005) Carbonic Anhydrase activity of the Photosystem II OEC-33 protein from pea.  Plant Cell Physiol. 46:1944-53.        

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This page last modified on July 25, 2006