Sundar Lab

Rice FST Database

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Insertion line ID	Flanking sequence homology and insertion site
	Lines RGT 001-011, sequences flanking Ds5'and 3'
RGT001	gi\|32978966\|dbj\|AK068942.1\| Oryza sativa (japonica cultivar-group) cDNA clone:J013170B09. (44979-45186)
RGT002	gi\|24414089\|dbj\|AP004306.3\| Oryza sativa, chromosome 7, PAC clone:P0506F02 (12402-13229)
RGT003	gi\|32261229\|dbj\|AP004815.2\| Oryza sativa, chromosome 2, PAC, clone:P0516G10 (12340-12311)
RGT004	gi\|28208274\|dbj\|AP003846.2\| Oryza sativa, chromosome 7, BAC, clone:OJ1710_H11 (110923-10018)
RGT005	gi\|32992789\|dbj\|AK107580.1\| Oryza sativa, cDNA clone:002-130-E02, (1956-1068)
RGT006	gi\|33285024\|gb\|AC135429.2\| Oryza sativa, chromosome 5 clone P0636F09, (91618- 91133)
RGT007	gi\|21952783\|dbj\|AP003227.3\| Oryza sativa, chromosome 1, PAC clone:P0018C10 (193618-194333)
RGT008	gi\|28411899\|dbj\|AP005473.3\| Oryza sativa, chromosome 7, BAC clone:OSJNBa0077B15 (49546-49838)
RGT010	gi\|19571136\|dbj\|AP003710.3\| Oryza sativa, chromosome 1, BAC clone:OSJNBb0032K15 (97843-98594)
RGT011	gi\|21306632\|gb\|AC118673.2\| Oryza sativa, , chromosome 3 clone OSJNBb0080O10 (9398-8994)
	Lines RGT 104-300, sequences flanking Ds5'
RGT104	gi\|17155067\|gb\|AC092697.6\| Oryza sativa, chromosome 10 BAC OSJNBb0060I05 (68271-68573)
RGT105	gi\|34447204\|dbj\|AP006161.2\| Oryza sativa, chromosome 2, BAC clone:B1267B06 (75712-75293)
RGT107	gi\|34850965\|gb\|AC146716.1\| Oryza sativa, chromosome 5 clone B1003C08 (33557-33165)
RGT108	gi\|34447204\|dbj\|AP006161.2\| Oryza sativa, chromosome 2, BAC clone: B1267B06 (17702-17866)
RGT112	gi\|38564216\|dbj\|AP005691.2\| Oryza sativa, chromosome 2, BAC clone:OSJNBa0053L11, (72045-71700)
RGT113	gi\|32994993\|dbj\|AK109784.1\| Oryza sativa, cDNA clone:002-147-C09, full insert sequence(818-1082)
RGT116	gi\|34327989\|dbj\|AP004017.2\| Oryza sativa, , chromosome 2, BAC clone:OJ1008_F08, (17395-17227)
RGT117	gi\|37806235\|dbj\|AP005467.3\| Oryza sativa, chromosome 8, BAC clone:OJ1349_D05, (146927-147074)
RGT118	gi\|33667120\|gb\|AC145396.3\| Oryza sativa, chromosome 5 clone OSJNBa0042F15 (138635-138234)
RGT119	gi\|34393723\|dbj\|AP003874.4\| Oryza sativa, genomic DNA, chromosome 7, BAC clone:OJ1118_G09 (14616-14391)
RGT121	gi\|21535949\|gb\|AC118672.2\| Oryza sativa, chromosome 3, clone OSJNBb0078P24, (111964-111511)
RGT122	gi\|32964838\|gb\|AC093088.2\| Oryza sativa, chromosome 5 clone OJ1001_G01, (49643-49456)
RGT123	gi\|33667138\|gb\|AC146468.1\| Oryza sativa, chromosome 3 clone OSJNBa0008D12 (53032-52607)
RGT124	gi\|30268681\|dbj\|AP003999.2\| Oryza sativa, genomic DNA, chromosome 2, BAC clone:OJ1115_A05, (88872-88526)
RGT125	gi\|37591154\|dbj\|AP005110.2\| Oryza sativa, genomic DNA, chromosome 2, PAC clone:P0605D08, (135877-135975)
RGT126	gi\|37591155\|dbj\|AP005116.2\| Oryza sativa, genomic DNA, chromosome 2, PAC clone:P0703B01 (48737-48960)
RGT127	gi\|34447204\|dbj\|AP006161.2\| Oryza sativa, genomic DNA, chromosome 2, BAC clone:B1267B06, (17700-17866)
RGT128	gi\|32489660\|emb\|AL662988.3\|OSJN00186 Oryza sativa, chromosome 4, BAC OSJNBa0089N06, (64931-64397)
RGT129	gi\|38564199\|dbj\|AP004062.2\| Oryza sativa, genomic DNA, chromosome 2, BAC clone:OJ1471_E11, (90138-89635)
RGT132	gi\|37591155\|dbj\|AP005116.2\| Oryza sativa, genomic DNA, chromosome 2, PAC clone:P0703B01, (48579-48964)
RGT133	gi\|32490498\|dbj\|AP005800.2\| Oryza sativa, chromosome 2, BAC clone:OSJNBa0016D04, (72499-73031)
RGT134	gi\|30693889\|ref\|NM_115230.2\| Arabidopsis thaliana pentatricopeptide (PPR) repeat-containing protein (At3g53700)
RGT135	gi\|31414483\|emb\|BX000502.2\|CNS08CDS Oryza sativa chromosome 12, . BAC OSJNBb0041E01 (113399-113706)
RGT140	gi\|40057018\|dbj\|AP006069.2\| Oryza sativa, genomic DNA, chromosome 2, PAC clone:P0025F02, (66898-66879)
RGT142	gi\|32129312\|gb\|AC137507.3\| Oryza sativa, chromosome 3 BAC OSJNBb0033J23 genomic sequence, (35652-35776)
RGT153	gi\|33353169\|dbj\|AP006556.1\| Oryza sativa, genomic DNA, chromosome 7, BAC clone:B1010G04a (6330-6439)
RGT155	gi\|32489572\|emb\|AL662974.3\|OSJN00171 Oryza sativa, chromosome 4, BAC clone: OSJNBa0061G20, (88100-87745)
RGT156	gi\|15623959\|dbj\|AP003435.2\| Oryza sativa, genomic DNA, chromosome 1, PAC clone:P0455H03 (38506-38908)
RGT157	gi\|30102951\|gb\|AC144491.1\| Oryza sativa, chromosome 3 clone OSJNAa0091P11, (86893-86924)
RGT158	gi\|12703229\|gb\|AY020187.1\| Oryza sativa microsatellite MRG2512 containing (CT)X28, closest to marker C1236,
RGT163	gi\|32994993\|dbj\|AK109784.1\| Oryza sativa, cDNA clone:002-147-C09, full insert sequence (818-1082)
RGT166	gi\|34327989\|dbj\|AP004017.2\| Oryza sativa, chromosome 2, BAC clone:OJ1008_F08, (17386-17227)
RGT167	gi\|21104554\|dbj\|AP003206.4\| Oryza sativa, genomic DNA, chromosome 1, BAC clone:B1146F03 (59905-60094)
RGT171	gi\|21535949\|gb\|AC118672.2\| Oryza sativa, chromosome 3, clone OSJNBb0078P24, (112019-111506)
RGT172	gi\|38142434\|dbj\|AP005615.2\| Oryza sativa, , chromosome 2, BAC clone:OSJNBb0006J22 (29039-28507)
RGT174	gi\|30268681\|dbj\|AP003999.2\| Oryza sativa, chromosome 2, BAC clone:OJ1115_A05, (89056-88522)
RGT176	gi\|34447204\|dbj\|AP006161.2\| Oryza sativa, chromosome 2, BAC clone:B1267B06, (76923-76705)
RGT179	gi\|38564199\|dbj\|AP004062.2\| Oryza sativa, chromosome 2, BAC clone:OJ1471_E11, (90138-89636)
RGT181	gi\|34447204\|dbj\|AP006161.2\| Oryza sativa, chromosome 2, BAC clone:B1267B06, (30360-30778)
RGT182	gi\|28971961\|dbj\|AP005126.3\| Oryza sativa, chromosome 7, BAC clone:OSJNBb0041B22 (53778-53411)
RGT183	gi\|32490498\|dbj\|AP005800.2\| Oryza sativa, chromosome 2, BAC clone:OSJNBa0016D04, (72499-72707)
RGT185	gi\|31414483\|emb\|BX000502.2\|CNS08CDS Oryza sativa, chromosome 12, . BAC OSJNBb0041E01 (113403-113706)
RGT187	gi\|29893133\|dbj\|AP003914.2\| Oryza sativa, chromosome 8, BAC clone:OJ1521_G02, (73769-73794)
RGT189	gi\|34447204\|dbj\|AP006161.2\| Oryza sativa, chromosome 2, BAC clone:B1267B06, (21550-21879)
RGT198	gi\|34447204\|dbj\|AP006161.2\| Oryza sativa, chromosome 2, BAC clone:B1267B06, (75909-75769)
RGT200	gi\|38568182\|gb\|AC136216.2\| Oryza sativa, chromosome 5 clone OSJNBa0022J22 (92357-92404)
RGT202	gi\|38568182\|gb\|AC136216.2\| Oryza sativa, chromosome 5 clone OSJNBa0022J22, (91654 -91499)
RGT203	gi\|38568182\|gb\|AC136216.2\| Oryza sativa, chromosome 5 clone OSJNBa0022J22, (92357-92404)
RGT207	gi\|33235577\|dbj\|AP004753.2\| Oryza sativa, chromosome 2, PAC clone:P0508B05, (8683-8310)
RGT210	gi\|34447204\|dbj\|AP006161.2\| Oryza sativa, chromosome 2, BAC clone:B1267B06, (76234-75769)
RGT212	gi\|32490365\|emb\|AL663020.4\|OSJN00220 Oryza sativa, chromosome 4, BAC clone: OSJNBa0049H08, (107866-107335)
RGT214	gi\|38198227\|dbj\|AP004877.2\| Oryza sativa, chromosome 2, PAC clone:P0472F10 (63126-63285)
RGT216	gi\|34447204\|dbj\|AP006161.2\| Oryza sativa, chromosome 2, BAC clone:B1267B06 (76398-76493)
RGT217	gi\|17298574\|gb\|AC079935.3\| Oryza sativa, chromosome 10, clone OSJNBa0095C06, (38766-38233)
RGT219	gi\|39540593\|gb\|AC134341.2\| Oryza sativa, chromosome 5 clone OSJNBa0027N19, (90824-91361)
RGT221	gi\|34447204\|dbj\|AP006161.2\| Oryza sativa, chromosome 2, BAC clone:B1267B06, (75532-75296)
RGT223	gi\|28416057\|gb\|AC140006.1\| Oryza sativa, chromosome 3 clone OSJNAa0090D11, (112064-111924)
RGT225	gi\|25553553\|dbj\|AP002838.2\| Oryza sativa, chromosome 6, BAC clone:OSJNBa0038F22 (26849-27266)
RGT227	gi\|38568182\|gb\|AC136216.2\| Oryza sativa, chromosome 5 clone OSJNBa0022J22, (93087-92972)
RGT230	gi\|33235577\|dbj\|AP004753.2\| Oryza sativa, chromosome 2, PAC clone:P0508B05 (8687-8309)
RGT232	gi\|34447204\|dbj\|AP006161.2\| Oryza sativa, chromosome 2, BAC clone:B1267B06, (69019-69188)
RGT233	gi\|32988600\|dbj\|AK103391.1\| Oryza sativa, cDNA clone:J033127L03, trehalose-6-phosphate phosphatase
RGT234	gi\|32129312\|gb\|AC137507.3\| Oryza sativa chromosome 3 BAC OSJNBb0033J23 (35652-35776)
RGT235	gi\|38198220\|dbj\|AP003975.2\| Oryza sativa, chromosome 2, BAC clone:OJ1004_E04, (30760-30223)
RGT236	gi\|33235577\|dbj\|AP004753.2\| Oryza sativa , chromosome 2, PAC clone:P0508B05, (8679-8312)
RGT245	gi\|33667140\|gb\|AC092075.7\| Oryza sativa chromosome 3 BAC OSJNBa0017N12 (90993-90782)
RGT249	gi\|37591155\|dbj\|AP005116.2\| Oryza sativa, chromosome 2, PAC clone:P0703B01, (1547-1015)
RGT250	gi\|34447204\|dbj\|AP006161.2\| Oryza sativa, chromosome 2, BAC clone:B1267B06, (26735-26460)
RGT253	gi\|34447204\|dbj\|AP006161.2\| Oryza sativa, chromosome 2, BAC clone:B1267B06, (22322-22149)
RGT257	gi\|34447204\|dbj\|AP006161.2\| Oryza sativa, chromosome 2, BAC clone:B1267B06, (49696-49787)
RGT258	gi\|22450535\|gb\|AC099399.2\| Oryza sativa, chromosome 3 clone OJ1006F06, (4829-4642)
RGT259	gi\|15289860\|dbj\|AP003224.3\| Oryza sativa, chromosome 1, PAC clone:P0010B10 (130092-129576)
RGT262	gi\|33235577\|dbj\|AP004753.2\| Oryza sativa, chromosome 2, PAC clone:P0508B05, (8679-8308)
RGT264	gi\|32992789\|dbj\|AK107580.1\| Oryza sativa, cDNA clone:002-130-E02, Os putative gag/pol polyprotein
RGT265	gi\|34447204\|dbj\|AP006161.2\| Oryza sativa, chromosome 2, BAC clone:B1267B06, (84878-85335)
RGT266	gi\|37693482\|dbj\|AP005835.2\| Oryza sativa, chromosome 2, BAC clone:OSJNBa0008E01, (13817-14224)
RGT267	gi\|28269486\|gb\|AC104487.3\| Oryza sativa chromosome 3 BAC OSJNBa0042I09 (OsCDPK1) (165957-166327)
RGT269	gi\|37534705\|ref\|NM_196673.1\| Oryza sativa, putative soluble starch synthase II-1 (OSJNBb0016G17.2), mRNA
RGT270	gi\|38488644\|dbj\|AP004863.2\| Oryza sativa, chromosome 2, BAC clone:OSJNBa0023I17, (31582-31504)
RGT273	gi\|33235577\|dbj\|AP004753.2\| Oryza sativa, chromosome 2, PAC clone:P0508B05, (8683-8310)
RGT274	gi\|32487867\|emb\|AL731637.2\|OSJN00278 Oryza sativa, chromosome 4, BAC clone: OSJNBb0115I09, (33635-33593)
RGT275	gi\|38568181\|gb\|AC136520.2\| Oryza sativa, chromosome 5 clone OSJNBa0017O06, (107494-108022)
RGT277	gi\|14670086\|gb\|AC087192.14\| Oryza sativa chromosome 10 BAC OSJNBa0005K07 (111148-111611)
RGT280	gi\|29837165\|dbj\|AP004333.3\| Oryza sativa, chromosome 7, PAC clone:P0034A04 (83021-83444)
RGT281	gi\|34850226\|dbj\|AP005284.2\| Oryza sativa, chromosome 2, BAC clone:B1121A12, (9940-10274)
RGT284	gi\|15144390\|gb\|AC069158.6\| Oryza sativa, chromosome2, clone OSJNBa0049O12, (14355-14103)
RGT290	gi\|37591141\|dbj\|AP004111.2\| Oryza sativa, chromosome 2, BAC clone:OJ1058_F07, (42663-42724)
RGT300	gi\|17155067\|gb\|AC092697.6\| Oryza sativa, chromosome 10 BAC OSJNBb0060I05 (68246-68465)
RGT852	gi\|20160735\|dbj\|AP003268.4\| Oryza sativa, chromosome 1, PAC clone:P0503C12 (56651 - 56840)
RGT853	gi\|20805242\|dbj\|AP004366.3\| Oryza sativa, chromosome 1, PAC clone:P0460C04 (155310-155923)
RGT854	gi\|20160735\|dbj\|AP003268.4\| Oryza sativa, chromosome 1, PAC clone:P0503C12 (37737-38361)
RGT856	gi\|20160735\|dbj\|AP003268.4\| Oryza sativa, chromosome 1, PAC clone:P0503C12 (40496-40410)
RGT860	gi\|20160735\|dbj\|AP003268.4\| Oryza sativa, chromosome 1, PAC clone:P0503C12 (65553- 65887)
RGT862	gi\|20161295\|dbj\|AP003409.4\| Oryza sativa, chromosome 1, BAC clone:B1131G08: (34945-35558)
RGT864	gi\|15146360\|dbj\|AP003237.2\| Oryza sativa, chromosome 1, PAC clone:P0046E05 (68632-68805)
RGT867	gi\|20160735\|dbj\|AP003268.4\| Oryza sativa, chromosome 1, PAC clone:P0503C12 (55724- 56406)
RGT868	gi\|29469501\|gb\|AC137547.2\| Oryza sativa chromosome 3 clone OSJNBa0052J20, (54397 - 54375)
RGT869	gi\|15289860\|dbj\|AP003224.3\| Oryza sativa, chromosome 1, PAC clone:P0010B10 (144667-144456)
RGT872	gi\|15623986\|dbj\|AP003453.3\| Oryza sativa, chromosome 1, PAC clone:P0480C01 (77557-78311)
RGT873	gi\|38568182\|gb\|AC136216.2\| Oryza sativa chromosome 5 clone OSJNBa0022J22, (93087-92972)
RGT875	gi\|20160735\|dbj\|AP003268.4\| Oryza sativa, chromosome 1, PAC clone:P0503C12 (14924-14692)
RGT876	gi\|20805114\|dbj\|AP003855.3\| Oryza sativa, chromosome 1, PAC clone:P0039G05, (4134- 4427)
RGT877	gi\|22093761\|dbj\|AP004009.3\| Oryza sativa, chromosome 7, BAC clone:OJ1339_F05 (105838-106485)
RGT880	gi\|20160735\|dbj\|AP003268.4\| Oryza sativa, chromosome 1, PAC clone:P0503C12 (34734-34451)
RGT885	gi\|20160991\|dbj\|AP003309.3\| Oryza sativa, chromosome 1, BAC clone:OSJNBb0036G09 (34341-34494)
RGT886	gi\|20160735\|dbj\|AP003268.4\| Oryza sativa, chromosome 1, PAC clone:P0503C12 (76243-76652)
RGT887	gi\|20160735\|dbj\|AP003268.4\| Oryza sativa, chromosome 1, PAC clone:P0503C12 (31432-31466)
RGT893	gi\|20160735\|dbj\|AP003268.4\| Oryza sativa, chromosome 1, PAC clone:P0503C12 (136498-137189)
RGT894	gi\|20975281\|dbj\|AP003076.3\| Oryza sativa, chromosome 1, PAC clone:P0481E12 (68237 - 68163)
RGT895	gi\|21715992\|dbj\|AP003344.2\| Oryza sativa, chromosome 1, PAC clone:P0413G02 (57978-58577)
RGT897	gi\|20160735\|dbj\|AP003268.4\| Oryza sativa, chromosome 1, PAC clone:P0503C12 (37785-37964)
RGT899	gi\|24414089\|dbj\|AP004306.3\| Oryza sativa, chromosome 7, PAC clone:P0506F02 (12402- 12802)
RGT900	gi\|39841489\|gb\|AC137620.2\| Oryza sativa, chromosome 5 clone OSJNBb0014K18, (99309- 100046)
RGT901	gi\|39841489\|gb\|AC137620.2\| Oryza sativa, chromosome 5 clone OSJNBb0014K18, (99390-99623)
RGT908	gi\|21715992\|dbj\|AP003344.2\| Oryza sativa, chromosome 1, PAC clone:P0413G02 (4947-5651)
RGT909	gi\|20160735\|dbj\|AP003268.4\| Oryza sativa, chromosome 1, PAC clone:P0503C12, (136499-137203)
RGT910	gi\|24414089\|dbj\|AP004306.3\| Oryza sativa, chromosome 7, PAC clone:P0506F02 (12402- 13066)
RGT919	gi\|24460031\|dbj\|AP003960.2\| Oryza sativa, chromosome 7, BAC clone:OJ1612_A04 (34823-34904)
RGT924	gi\|22093761\|dbj\|AP004009.3\| Oryza sativa, chromosome 7, BAC clone:OJ1339_F05 (105838- 106469)
RGT928	gi\|22093761\|dbj\|AP004009.3\| Oryza sativa, chromosome 7, BAC clone:OJ1339_F05 (105838-106455)
RGT930	gi\|38347819\|dbj\|AP004845.2\| Oryza sativa, chromosome 2, BAC clone:OJ1233_A01, (5438-4892)
RGT933	gi\|22830906\|dbj\|AP003259.4\| Oryza sativa, chromosome 1, PAC clone:P0466H10 (145023 - 144944)
RGT934	gi\|24414089\|dbj\|AP004306.3\| Oryza sativa, chromosome 7, PAC clone:P0506F02 (12402-13033)
RGT939	gi\|31431767\|gb\|AE017088.1\| Oryza sativa chromosome 10, section 42 of 77 (270326-270343)
RGT941	gi\|28412542\|emb\|AL844497.4\|CNS08CAU Oryza sativa chromosome 12, . BAC OSJNBa0085B23 (124136- 123980)
RGT943	gi\|22830906\|dbj\|AP003259.4\| Oryza sativa, chromosome 1, PAC clone:P0466H10 (145303-144841)
RGT945	gi\|24414089\|dbj\|AP004306.3\| Oryza sativa, chromosome 7, PAC clone:P0506F02 (12402-13066)
RGT946	gi\|15128435\|dbj\|AP003610.2\| Oryza sativa, chromosome 1, PAC clone:P0402A09 (89710-89511)
RGT950	gi\|22093761\|dbj\|AP004009.3\| Oryza sativa, chromosome 7, BAC clone:OJ1339_F05 (105838-106238)
RGT953	gi\|42543982\|dbj\|AP003632.2\| Oryza sativa, chromosome 6, PAC clone:P0624B04, (15268-15547)
RGT955	gi\|38636904\|dbj\|AP004568.3\| Oryza sativa, chromosome 8, PAC clone:P0547A06 (2544-2864)
RGT963	gi\|24414089\|dbj\|AP004306.3\| Oryza sativa, chromosome 7, PAC clone:P0506F02 (12582-12625)
RGT969	gi\|34395224\|dbj\|AP005127.4\| Oryza sativa, chromosome 7, BAC clone:OSJNBb0062D12 (117136-116669)
RGT970	gi\|24414089\|dbj\|AP004306.3\| Oryza sativa, chromosome 7, PAC clone:P0506F02 (12402-13109)
RGT972	gi\|24211088\|gb\|AC107226.2\| Oryza sativa chromosome 3 clone OSJNBa0081P02, (42922-42820)
RGT982	gi\|39725627\|dbj\|AP005872.2\| Oryza sativa, chromosome 9, BAC clone:B1168F12, (13365-13207)
RGT991	gi\|24414089\|dbj\|AP004306.3\| Oryza sativa, chromosome 7, PAC clone:P0506F02 (12767-12828)
RGT998	gi\|37591137\|dbj\|AP004026.2\| Oryza sativa, chromosome 2, BAC clone:OJ1136_C04, (: 9804-9518)
RGT999	gi\|24414089\|dbj\|AP004306.3\| Oryza sativa, chromosome 7, PAC clone:P0506F02 (12402-13109)
RGT1422	gi\|34447204\|dbj\|AP006161.2\| Oryza sativa, chromosome 2, BAC clone:B1267B06, (74790-74363)
RGT1424	gi\|33235577\|dbj\|AP004753.2\| Oryza sativa, chromosome 2, PAC clone:P0508B05, (8676-8307)
RGT1425	gi\|30268681\|dbj\|AP003999.2\| Oryza sativa, chromosome 2, BAC clone:OJ1115_A05, (84679-84627)
RGT1426	gi\|34447204\|dbj\|AP006161.2\| Oryza sativa, chromosome 2, BAC clone:B1267B06, (28672-28880)
RGT1427	gi\|22532546\|gb\|AC131967.1\| Oryza sativa, chromosome 10 clone OSJNAa0049K09, (51448-51707)
RGT1430	gi\|15408872\|dbj\|AP004127.1\| Oryza sativa, chromosome 1, clone:P0005H10 (109892-109770)
RGT1432	gi\|34447204\|dbj\|AP006161.2\| Oryza sativa, chromosome 2, BAC clone:B1267B06, (33454-33534)
RGT1433	gi\|34447204\|dbj\|AP006161.2\| Oryza sativa, chromosome 2, BAC clone:B1267B06, (33401-33592)
RGT1435	gi\|21912510\|emb\|AL662957.2\|OSJN00157 Oryza sativa, chromosome 4, BAC OSJNBa0013K16, (91531-91605)
RGT1436	gi\|34447204\|dbj\|AP006161.2\| Oryza sativa, chromosome 2, BAC clone:B1267B06, (63824-64468)
RGT1437	gi\|31431767\|gb\|AE017088.1\| Oryza sativa chromosome 10, section 42 of 77 (270326 -270343)
RGT1439	gi\|29125761\|emb\|AL831805.4\|CNS08CAI Oryza sativa chromosome 12, . BAC OSJNBa0085J02 (22340-22651)
RGT1442	gi\|21912485\|emb\|AL606668.2\|OSJN00083 Oryza sativa, chromosome 4, BAC clone: OSJNBa0064G10, (75394-74826)
RGT1445	gi\|34447204\|dbj\|AP006161.2\| Oryza sativa, chromosome 2, BAC clone:B1267B06, (32061-32398)
RGT1446	gi\|34447204\|dbj\|AP006161.2\| Oryza sativa, chromosome 2, BAC clone:B1267B06, complete sequence (18928- 18713)
RGT1447	gi\|45126775\|dbj\|AP003490.2\| Oryza sativa, chromosome 6, PAC clone:P0592E11, (74077 - 74178)
RGT1449	gi\|39176\|emb\|X00409.1\|ATTMS2 A. tumefaciens plasmid pTiA6 tms transcript 2 locus a gene needed for tumor growth in plants (401-846)
RGT1451	gi\|32879800\|dbj\|AP006070.2\| Oryza sativa, chromosome 2, BAC clone:B1342F01, (133083-133519)
RGT1454	gi\|12324670\|gb\|AC011020.8\|AC011020 Arabidopsis thaliana chromosome 1 BAC F12B7 (70775-71100)
RGT1455	gi\|38678134\|dbj\|AP005833.2\| Oryza sativa, chromosome 9, BAC clone:OJ1328_D07, (40751-40947)
RGT1456	gi\|45735852\|dbj\|AP004098.3\| Oryza sativa, chromosome 2, BAC clone:OJ2056_H01 (28142-28498)
RGT1459	gi\|32879800\|dbj\|AP006070.2\| Oryza sativa, chromosome 2, BAC clone:B1342F01, (133449-133517)
RGT1460	gi\|34447204\|dbj\|AP006161.2\| Oryza sativa, chromosome 2, BAC clone:B1267B06, (: 75594-76105)
RGT1461	gi\|30268681\|dbj\|AP003999.2\| Oryza sativa, chromosome 2, BAC clone:OJ1115_A05, (8524-84637)
RGT1462	gi\|30268681\|dbj\|AP003999.2\| Oryza sativa, chromosome 2, BAC clone:OJ1115_A05, (94268-94044)
RGT1463	gi\|42408124\|dbj\|AP004190.3\| Oryza sativa, chromosome 8, BAC clone:OJ1506_F01 (49581-49408)
RGT1464	gi\|34447204\|dbj\|AP006161.2\| Oryza sativa, chromosome 2, BAC clone:B1267B06, (76923-76706)
	Lines RDs 001-0052, sequences flanking Ds5'and 3'
RDs001	gi\|31433244\|gb\|AE017115.1\| Oryza sativa, chromosome 10, BAC OSJNBa0040D23 (224809-224464)
RDs003	gi\|32492428\|emb\|AL731626.3\|OSJN00271 Oryza sativa, chromosome 4, BAC clone: OSJNBb0002J11(70446-70595)
RDs004	gi\|20804545\|dbj\|AP003232.3\| Oryza sativa, chromosome 1, PAC clone:P0034E02 (90974-91276)
RDs005	gi\|20143586\|gb\|AC026758.8\| Oryza sativa chromosome 10 BAC OSJNBa0015J15, arm repeat containing protein (44866-44394)
RDs006	gi\|32978346\|dbj\|AK068328.1\| Oryza sativa, cDNA clone:J013146P05, (445-796)
RDs008	gi\|32977845\|dbj\|AK067827.1\| Oryza sativa, cDNA clone:J013120O20, (2399-2321)
RDs010	gi\|32492292\|emb\|AL662987.3\|OSJN00188 Oryza sativa, chromosome 4, BAC clone: OSJNBa0088A01 (113533-112996)
RDs011	gi\|28173090\|gb\|AC091532.13\| Oryza sativa chromosome 3 BAC OSJNBa0078A17 (133530-133239)
RDs013	gi\|38175554\|dbj\|AP004592.3\| Oryza sativa, chromosome 8, PAC clone:P0666G10 (71055-71350)
RDs014	gi\|21104881\|gb\|AC122148.1\| Oryza sativa, chromosome 10 clone OSJNAb0075K12, (104985-105097)
RDs015	gi\|23379120\|gb\|AC134769.1\| Oryza sativa, chromosome 3 clone OJ1145F05, (101215-101437)
RDs017	gi\|16904682\|dbj\|AP003347.3\| Oryza sativa, chromosome 1, PAC clone:P0445E10 (32407-32667)
RDs018	gi\|21624135\|dbj\|AP003220.6\| Oryza sativa, chromosome 1, BAC clone:OSJNBb0035I14 (51402-51812)
RDs019	gi\|32964840\|gb\|AC084818.3\| Oryza sativa, chromosome 5 clone P0668H12, (44223-44741)
RDs022	gi\|34394358\|dbj\|AP004314.3\| Oryza sativa,chromosome 7,PACclone:P0495H05, Os PDR-type ABC transporter 9 (105169-104692)
RDs023	gi\|21912975\|dbj\|AP003866.2\| Oryza sativa, chromosome 7, BAC clone:OJ1092_A07, At CDPK19 (124616-124228)
RDs025	gi\|16904682\|dbj\|AP003347.3\| Oryza sativa, chromosome 1, PAC clone:P0445E10 (32401-32199)
RDs026	gi\|32964840\|gb\|AC084818.3\| Oryza sativa, chromosome 5 clone P0668H12 (44196-44038)
RDs027	gi\|38568180\|gb\|AC108503.3\| Oryza sativa, chromosome 5 clone OJ1387_F08, (125649-125201)
RDs028	gi\|17155067\|gb\|AC092697.6\| Oryza sativa, chromosome 10 BAC OSJNBb0060I05 (171247-171604)
RDs029	gi\|33383224\|dbj\|AP005529.2\| Oryza sativa, chromosome 8, PAC clone:P0702E04,(AGL6), OsMADS7 (17683-17235)
RDs030	gi\|29647483\|dbj\|AP003888.3\| Oryza sativa, chromosome 8, BAC clone:OJ1191_A10 (8771-9312)
RDs032	gi\|28570323\|gb\|AC108906.9\| Oryza sativa chromosome 3 BAC OSJNBa0087C10 (32979-32448)
RDs034	gi\|32991770\|dbj\|AK106561.1\| Oryza sativa, cDNA clone:002-110-C01, (1812-1532)
RDs039	gi\|38198231\|dbj\|AP005865.2\| Oryza sativa , chromosome 2, BAC clone:OSJNBb0037J12, (3948-39254)
RDs040	gi\|32480037\|emb\|AL606637.3\|OSJN00076 Oryza sativa, chromosome 4, BAC clone: OSJNBa0039K24, (126861-126926)
RDs044	gi\|14495364\|gb\|AC090485.3\|AC090485 Oryza sativa, chromosome 3, clone OSJNBa0067N01, (74171-74281)
RDs045	gi\|12313696\|dbj\|AP003106.1\| Oryza sativa, chromosome 1, PAC clone:P0665A11 (88541-88883)
RDs046	gi\|34732727\|gb\|AC134930.2\| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0042J17, (69249-68797)
RDs047	gi\|38568180\|gb\|AC108503.3\| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1387_F08, (90528-90911)
RDs048	gi\|26665712\|gb\|AC125496.2\| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0098H14, (107796-107323)
RDs049	gi\|20975281\|dbj\|AP003076.3\| Oryza sativa, chromosome 1, PAC clone:P0481E12 (64174-63650)
RDs050	No homology found
RDs051	gi\|34732727\|gb\|AC134930.2\| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0042J17 (82931-82596)
RDs052	gi\|29837165\|dbj\|AP004333.3\| Oryza sativa, chromosome 7, PAC clone:P0034A04, (130579-130810)
	dSpm insertion lines
	Lines RdSpm001-024, sequences flanking dSpm5' and 3'
RdSpm001	gi\|39725625\|dbj\|AP005829.2\| Oryza sativa, chromosome 9, BAC clone:B1008E06, (121988- 122130)
RdSpm002	gi\|45434523\|gb\|AC136218.2\| Oryza sativa, chromosome 5 clone, OSJNBa0039A21, (8651- 8118)
RdSpm003	gi\|21715995\|dbj\|AP003746.2\| Oryza sativa, chromosome 7, BAC clone:OJ1123_C12 (70573- 70961)
RdSpm004	gi\|45434523\|gb\|AC136218.2\| Oryza sativa, chromosome 5 clone OSJNBa0039A21, (8651- 8131)
RdSpm005	gi\|21902115\|dbj\|AP004723.4\| Oryza sativa, chromosome 1, BAC clone:OJ1126_G08 (103529- 103687)
RdSpm006	gi\|21902115\|dbj\|AP004723.4\| Oryza sativa, chromosome 1, BAC clone:OJ1126_G08 (103520- 102984)
RdSpm008	gi\|38567826\|emb\|AL606656.3\|OSJN00099 Oryza sativa, chromosome 4, BAC clone: OSJNBb0020J19, (61161- 61350)
RdSpm009	gi\|34732726\|gb\|AC129719.2\| Oryza sativa, chromosome 5 clone OSJNBb0013J02, (84967- 85340)
RdSpm010	gi\|20162\|emb\|Z11475.1\|OS5SDNAJ O.sativa 5S DNA (97-302)
RdSpm013	gi\|38175504\|dbj\|AP003918.3\| Oryza sativa, chromosome 8, BAC clone:OJ1705_A03 (28594- 28807)
RdSpm014	gi\|25900559\|emb\|AL928749.3\|CNS08CBM Oryza sativa chromosome 12, . BAC OSJNBa0002O20 (49221- 49651)
RdSpm015	gi\|39725613\|dbj\|AP004812.2\| Oryza sativa, chromosome 2, PAC clone:P0026H03, (38800- 39225)
RdSpm016	gi\|39725613\|dbj\|AP004812.2\| Oryza sativa, chromosome 2, PAC clone:P0026H03, (38800-39226)
RdSpm017	gi\|30725921\|gb\|AC099043.6\| Oryza sativa chromosome 3 BAC OSJNBa0079B15 (137048- 137507)
RdSpm018	gi\|45126807\|dbj\|AP004573.3\| Oryza sativa, chromosome 7, PAC clone:P0678G09 (96831- 97129)
RdSpm019	gi\|15290267\|gb\|AC079021.2\| Oryza sativa chromosome 5 clone P0008A07, (83551- 83162)
RdSpm020	gi\|38142425\|dbj\|AP004776.2\| Oryza sativa, chromosome 2, PAC clone:P0452F04, (61838- 61868)
RdSpm021	gi\|34327992\|dbj\|AP004125.2\| Oryza sativa, chromosome 2, BAC clone:OJ1767_D02 (98591- 98133)
RdSpm022	gi\|24080635\|gb\|AC104473.2\| Oryza sativa, chromosome 3 clone OJ1626B05, (7586- 7807)
RdSpm023	gi\|28416057\|gb\|AC140006.1\| Oryza sativa, chromosome 3 clone OSJNAa0090D11, (44971- 44371)
RdSpm024	gi\|22417315\|gb\|AC105364.2\| Oryza sativa, chromosome 3 clone OJ1743A09 (54629- 54320)
	Lines RdSpm101A-221A, sequences flanking dSpm5'
RdSpm101A	gi\|24460082\|dbj\|AP004463.2\| Oryza sativa, genomic DNA, chromosome 8, PAC clone:P0456B03 (101327- 100592)
RdSpm103	gi\|38093248\|dbj\|AP005614.2\| Oryza sativa, Chromosome 2, BAC clone:OSJNBa0090H18, (57568- 58183)
RdSpm104	gi\|32488733\|emb\|AL606655.3\|OSJN00103 Oryza sativa, chromosome 4, BAC clone: OSJNBb0040D15, (16991- 17557)
RdSpm105	gi\|33666926\|emb\|AL928780.4\|CNS08CCA Oryza sativa chromosome 12, . BAC OSJNBa0018C20 (15953- 16263)
RdSpm105A	gi\|19386808\|dbj\|AP003735.4\| Oryza sativa, chromosome 1, BAC clone:B1147A04 (16114- 15279)
RdSpm105B	gi\|32488331\|emb\|AL606616.3\|OSJN00070 Oryza sativa, chromosome 4, BAC clone: OSJNBb0060M15, (95197- 95417)
RdSpm105C	gi\|32479822\|emb\|AL731620.2\|OSJN00270 Oryza sativa, chromosome 4, BAC clone: OSJNBb0003A12, (73547- 73247)
RdSpm107	gi\|28269488\|gb\|AC092781.6\| Oryza sativa chromosome 3 BAC OSJNBb0094O03 (2328- 2998)
RdSpm107A	gi\|38488790\|gb\|AC136148.2\| Oryza sativa, chromosome 11 BAC clone OSJNBa0029K08, (26540- 27315)
RdSpm107B	gi\|29501841\|gb\|AC105732.3\| Oryza sativa, chromosome 3 clone OSJNBa0090D11, (73257- 73814)
RdSpm108	gi\|32328950\|gb\|AC137997.2\| Oryza sativa chromosome 3 BAC OJ1499_D04 (30162- 29616)
RdSpm109	gi\|24460082\|dbj\|AP004463.2\| Oryza sativa, chromosome 8, PAC clone:P0456B03 (101253- 101084)
RdSpm109A	gi\|32479965\|emb\|AL606594.3\|OSJN00025 Oryza sativa, chromosome 4, BAC clone: OSJNBa0029H02, (124344-123731)
RdSpm109B	gi\|31431109\|gb\|AE017075.1\| Oryza sativa (japonica cultivar-group) chromosome 10, section 29 of 77 of (292263-292988)
RdSpm110A	gi\|34393728\|dbj\|AP003956.4\| Oryza sativa, chromosome 7, BAC clone:OJ1457_D07 (49219- 48496)
RdSpm112	gi\|18481977\|gb\|AC092173.3\| Oryza sativa chromosome 10 clone OSJNBa0095J15, (122395-122376)
RdSpm112A	gi\|32489817\|emb\|AL663006.3\|OSJN00204 Oryza sativa, chromosome 4, BAC clone: OSJNBb0039L24 (99408-99244)
RdSpm112B	gi\|32362354\|gb\|AC145386.1\| Oryza sativa chromosome 3 BAC OSJNBb0028K20 (105517-105355)
RdSpm201	gi\|32328950\|gb\|AC137997.2\| Oryza sativa chromosome 3 BAC OJ1499_D04 (30048- 29872)
RdSpm201A	gi\|37591139\|dbj\|AP004063.2\| Oryza sativa, chromosome 2, BAC clone:OJ1476_F05, (47014- 47516)
RdSpm202A	gi\|42408367\|dbj\|AP004584.3\| Oryza sativa, chromosome 8, PAC clone:P0007D08, (92631-92053)
RdSpm203	gi\|18092956\|gb\|AC090873.4\| Oryza sativa chromosome 10 clone OSJNBa0029P06, (28288-28644)
RdSpm203A	gi\|20160607\|dbj\|AP003251.3\| Oryza sativa, chromosome 1, PAC clone:P0446B05 (39954- 39390)
RdSpm205A	gi\|22093709\|dbj\|AP003832.3\| Oryza sativa, chromosome 7, BAC clone:OJ1458_B07 (7751- 8497)
RdSpm207	gi\|33636432\|dbj\|AP004376.2\| Oryza sativa, chromosome 8, PAC clone:P0481F05, (117562- 116960)
RdSpm209	gi\|20160735\|dbj\|AP003268.4\| Oryza sativa,, chromosome 1, PAC clone:P0503C12 (103651- 104139)
RdSpm209A	gi\|17385724\|dbj\|AP003434.2\| Oryza sativa, chromosome 1, PAC clone:P0452F10 (140400- 139793)
RdSpm211A	No homology found
RdSpm213	gi\|31442543\|gb\|AC133216.2\| Oryza sativa, chromosome 11 BAC clone OSJNBb0049B20, (11481- 12243)
RdSpm213B	gi\|38016026\|gb\|AC114828.2\| Oryza sativa, chromosome 11 clone OSJNBb0038L23, (19428- 18931)
RdSpm216	gi\|31621038\|dbj\|AP004119.2\| Oryza sativa, chromosome 2, BAC clone:OJ1288_G09, (71808- 71026)
RdSpm217	gi\|5295936\|dbj\|AB026295.2\| Oryza sativa, chromosome 6, clone:P0681F10 (19033- 18881)
RdSpm217B	gi\|32482963\|emb\|AL606454.3\|OSJN00009 Oryza sativa, chromosome 4, BAC clone: OSJNBa0033G05, (133481- 133524)
RdSpm218	gi\|34395280\|dbj\|AP005292.4\| Oryza sativa, chromosome 7, BAC clone:OJ1340_C08 (98698-99161)
RdSpm221A	gi\|32489031\|emb\|AL606999.3\|OSJN00127 Oryza sativa, chromosome 4, BAC clone: OSJNBa0084K01, (53198-52805)
RdSpm207	gi\|33636432\|dbj\|AP004376.2\| Oryza sativa, chromosome 8, PAC clone:P0481F05, (117562- 116960)
RdSpm209	gi\|20160735\|dbj\|AP003268.4\| Oryza sativa,, chromosome 1, PAC clone:P0503C12 (103651- 104139)
RdSpm209A	gi\|17385724\|dbj\|AP003434.2\| Oryza sativa, chromosome 1, PAC clone:P0452F10 (140400- 139793)
RdSpm211A	No homology found
RdSpm213	gi\|31442543\|gb\|AC133216.2\| Oryza sativa, chromosome 11 BAC clone OSJNBb0049B20, (11481- 12243)
RdSpm213B	gi\|38016026\|gb\|AC114828.2\| Oryza sativa, chromosome 11 clone OSJNBb0038L23, (19428- 18931)
RdSpm216	gi\|31621038\|dbj\|AP004119.2\| Oryza sativa, chromosome 2, BAC clone:OJ1288_G09, (71808- 71026)
RdSpm217	gi\|5295936\|dbj\|AB026295.2\| Oryza sativa, chromosome 6, clone:P0681F10 (19033- 18881)
RdSpm217B	gi\|32482963\|emb\|AL606454.3\|OSJN00009 Oryza sativa, chromosome 4, BAC clone: OSJNBa0033G05, (133481- 133524)
RdSpm218	gi\|34395280\|dbj\|AP005292.4\| Oryza sativa, chromosome 7, BAC clone:OJ1340_C08 (98698-99161)
RdSpm221A	gi\|32489031\|emb\|AL606999.3\|OSJN00127 Oryza sativa, chromosome 4, BAC clone: OSJNBa0084K01, (53198-52805)

Note: RGT- Rice gene trap insertion lines, RDs- Rice simple Ds insertion lines and RdSpm- Rice dSpm insertion lines.

Lines RGT 001-011, sequences flanking Ds5'and 3'

Lines RGT 104-300, sequences flanking Ds5'

Lines RDs 001-0052, sequences flanking Ds5'and 3'

Lines RdSpm001-024, sequences flanking dSpm5' and 3'